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MS - Bioinformatics Program

PhD - Bioinformatics
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Associated Departments

School of Biology

School of Biomedical
Engineering

School of Mathematics

College of Computing

FACULTY
Computational Genomics
TITLE DEPARTMENT RESEARCH AREA

Bergman, Nicholas

Assistant Professor School of Biology Medical microbiology, Host-pathogen interactions, Anthrax, Bacterial gene regulation and genomics.

Borodovsky, Mark

Regents' Professor, Director Department of Biomedical Engineering at CoE and Computational Science & Engineering Division at CoC Model choice, Bayesian inference, Sequential decisions, Markov models, Machine learning, Pattern recognition in biological and biomedical data analysis. Applications: modeling genomic DNA; ab initio gene prediction algorithms; unsupervised and semi-unsupervised algorithms for genomic sequence interpretation.
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Jordan, King

Associate Professor School of Biology Genome evolution, transposable elements, gene regulation and expression, non-coding RNAs, convergent evolution.
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Konstantinidis, Kostas

Assistant Professor School of Civil and Environmental Engineering Environmental microbiology and genomics. Population and single-cell genomics. Computational approaches for studying the ecology and evolution of microorganisms.

Lee, Eva

Associate
Professor
School of Industrial and Systems Engineering Biomedical informatics, modeling and computing. Machine learning and pattern recognition approaches to medial diagnosis/clinical data analysis. Genomic pattern recognition and prediction of function regions. Combinatorial approach and fast heuristics for DNA sequencing and multiple alignment problems.

Loeffler, Frank

Associate
Professor
Carlton Wilder Associate Professor of Environmental Engineering Microbial detoxification, bioremediation applications, novel bacteria, and environmental genomics.

Park, Haesun

Professor Computational Science and Engineering Division at College of Computing Pattern Analysis, Numerical Algorithms, Data Mining, Scientific Computing, Bioinformatics, Information Retrieval, Parallel Computing.

Vidakovic, Brani

Professor School of Industrial and Systems Engineering Wavelets; Statistical analysis of high frequency data;
Random Processes that scale, Long Range Dependence;
Multifractality, Bayesian statistical modeling,
Nonparametric statistical inference.

Vigoda, Eric

Associate Professor School of Computer Science Randomized Algorithms, especially Markov Chain Monte Carlo Methods; Statistical Physics; Analysis of Markov chain models arising in Evolutionary Biology.

Yi, Soojin

Assistant Professor School of Biology Comparative Genomics, Molecular Evolution, Bioinformatics, Population Genetics.
FACULTY
High Performance Computing/ Databases
TITLE DEPARTMENT RESEARCH AREA

Bader, David

Associate Professor
Executive Director of High-Performance Computing
Computational Science & Engineering Division High-performance computing for computational biology, parallel algorithms, bioinformatics, phylogeny reconstruction, epidemiology, protein-protein interaction networks, and large-scale graph analysis.

Navathe, Shamkant

Professor College of Computer Science Database design, modeling and integration: genomic data management, intelligent information retrieval, data mining and warehousing, web-based knowledge warehouses and mobile database synchronization.
FACULTY
Imaging
TITLE DEPARTMENT RESEARCH AREA

Tannenbaum, Allen

Chair Professor Department of Biomedical Engineering Biomedical engineering: computer vision, image processing, biomolecular imaging.
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Wang, Dongmei May

Assistant Professor Department of Biomedical Engineering Medical informatics and bioimaging, developing diverse biomedical data analysis, modeling, interpretation algorithms and management infrastructure for disease detection, treatment, and drug discovery.
FACULTY
Integrative Systems
TITLE DEPARTMENT RESEARCH AREA

Kemp, Melissa

Assistant Professor Department of Biomedical Engineering Signal transduction network inference, post-translational thiol modifications, nonlinear dynamics of biochemical systems.

Voit, Eberhard

Professor and Research Alliance Eminent Scholar in Biological Systems Department of Biomedical Engineering Biomedical Systems Analysis, Mathematical Modeling and Simulation, Metabolic Pathways and Networks, Multi-level Assessments of Biological Complexity, S-systems.
FACULTY
Population Dynamics
TITLE DEPARTMENT RESEARCH AREA

Bunimovich, Leonid

Regents' Professor


Adjunct Professor

School of Mathematics*

School of Biology^

Compex Systems: evolution of complex systems, stochastic processes, inverse problems, dynamics of spatially extended systems, mathematical biology, bioinformatics, and neuroscience.

Weiss, Howard

Professor School of Mathematics Nonlinear dynamics: population biology/ecology, spatial models of infectious diseases, agent-based models, symbolic dynamics, wavelets.

Weitz, Joshua

Assistant Professor School of Biology Theoretical ecology; bacterial viruses; microbial communities; biological networks; vascular plants; scaling laws; disease dynamics; interacting particle systems; adaptive dynamics.
FACULTY
Structural Biology
TITLE DEPARTMENT RESEARCH AREA

Harvey, Stephen

Professor, Research Alliance Eminent Scholar in Structural Biology School of Biology Macromolecular structure and dynamics and the relationship of these to biological function. Structure-function relationships in the ribosome. Lipproteins and atheroschlerosis. Viral assembly.

Heitsch, Christine E.

Assistant Professor School of Mathematics Discrete mathematical biology, combinatorics on words, and string algorithms. Design, analysis, and prediction of RNA secondary structures and DNA code words. Sequence / structure / function relationships for RNA viral genomes.

Schmidt-Krey, Ingeborg

Assistant Professor School of Biology Structure and function of eukaryotic membrane proteins; two-dimensional crystallization; electron crystallography; electron cryo-microscopy (cryo-EM).

Sherrill, David

Professor School of Chemistry & Biochemistry and College of Computing Benchmark-quality quantum computations on prototypes of noncovalent interactions, particularly pi-pi interactions, including substituent effects. Comparison of potential energy landscapes for model interactions with frequency of contacts in the PDB.

Skolnick, Jeffrey

Professor, Georgia Research Alliance Eminent Scholar in Computational Biology School of Biology Prediction of protein structure and function from sequence; prediction of protein tertiary and quaternary structure and folding pathways; prediction of small molecule ligands for drug discovery, prediction of druggable protein targets, equilibrium and dynamic properties of lipid bilayers; simulation of virus coat protein assembly.