Mark Borodovsky, Ph.D.
Director, Center for Bioinformatics and Computational Genomics
Regents' Professor

Department of Biomedical Engineering and Computational Science and Engineering Division
Georgia Institute of Technology
Atlanta, GA 30332-0535

Phone:404-894-8432
Fax:404-894-4243
Location:GT: Whitaker 4102
E-Mail: borodovsky@gatech.edu
URL: http://www.cc.gatech.edu/inside/units/cse/faculty-staff/directory/mark-borodovsky

Areas of Research

Development and applicaton of new machine learning and pattern recognition methods in bioinformatics and biological systems.
http://opal.biology.gatech.edu/GeneMark/

Educational Background

• Ph.D., Moscow Institute of Physics and Technology, 1976
• M.S., Moscow Institute of Physics and Technology, 1972

Selected Research Publications

Books
• Borodovsky M. and Ekisheva S. Problems and Solutions in Biological Sequence Analysis, Cambridge University Press, 2006 - Book Review
  (published in Russian in 2008)
  
  Publications
• Vardges Ter-Hovhannisyan, Alexandre Lomsadze, Yury O. Chernoff and Mark Borodovsky, Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training, Genome Research, 2008 Dec;18(12):1979-90.
  http://genome.cshlp.org/content/18/12/1979
  
  
• Jittima Piriyapongsa, Mark T. Rutledge, Sanil Patel, Mark Borodovsky and I. King Jordan (2007) Evaluating the protein coding potential of exonized transposable element sequences, Biology Direct, 2: 31.
  http://www.biology-direct.com/content/2/1/31/abstract
  
  
• Mitrophanov A. Y. and M. Borodovsky (2007) Convergence of the TKF91 model and biological sequence length evolution, Mathematical Biosciences, 209:7, 470-485.
  http://opal.biology.gatech.edu/GeneMark/PAPERS/TKF91.pdf
  
  
• Piriyapongsa J., N. Polavarapu, M. Borodovsky, and J. McDonald (2007) Exonization of the LTR transposable elements in human genome, BMC Genomics, 8:291.
  http://opal.biology.gatech.edu/GeneMark/PAPERS/LTR.pdf
  
  
• Mitrophanov Y., G. Churchward and M. Borodovsky (2007) Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system, J. of Theoretical Biology, 246, 113-128.
  http://opal.biology.gatech.edu/GeneMark/PAPERS/Modeling_CovRS___Article.pdf
  
  
• Aydin Z., Altunbasak Y. and Borodovsky M. "Protein secondary structure prediction for a single-sequence using hidden semi-Markov models." BMC Bioinformatics, 2006, 7:178.
  http://opal.biology.gatech.edu/GeneMark/PAPERS/ipssp.pdf
  
  
  
  
• Please visit http://opal.biology.gatech.edu/GeneMark/references.html for the most updated list of publications.